treefam.org Report : Visit Site

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sanger.ac.uk ensembl.org ebi.ac.uk biomedcentral.com gigasciencejournal.com 

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-- -- -- -- -- -- -- -- -- services research training industry about us [service-name] -- examples: brca2 , ensp00000428982 , or do a sequence search home search browse download help forum -- [section title] > item 3 -- -- please note: this site relies heavily on the use of javascript. without a javascript-enabled browser, this site will not function correctly. please enable javascript and reload the page, or switch to a different browser. treefam - database of animal gene trees (release 9, march 2013, 109 species, 15,736 families) treefam is a database composed of phylogenetic trees inferred from animal genomes. it provides orthology/parology predictions as well the evolutionary history of genes. (see the brca2 gene family page as an example) . search treefam (hmm-based protein sequence search vs. treefam & pfam hmms) enter protein sequence here insert into tree insert into treefam gene tree using parsimony ( super-fast, might insert into several branches) maximum likelihood ( more accurate, might take a bit longer) curious what treefam is? click here . -- legacy.treefam.org .-- sample gene families brca2 cox1 pax four go to family page of brca2 . evolution of the pax family. paper . go to family page of brca2 . -- species in treefam species tree used in treefam 9. see full tree here . the treefam project temporibus autem quibusdam et aut officiis debitis aut rerum necessitatibus saepe eveniet. -- treefam news -- feature: treefam family visualisation available: [...] (posted 19 feb 2014) feature: tree insertion available: [...] (posted 9 sept 2013) suggestion: downloading the full gene tree view: [...] (posted 3 may 2013) suggestion: domain diagrams as hyperlinks to pfam: [...] (posted 3 may 2013) treefam 9 is now available: [...] (posted 3 may 2013) treefam: what is in the next release: [...] (posted 10 december 2012) we are on the move: [...] (posted 1 november 2012) treefam is back with a new release: [...] (posted 27 march 2012) why our data is good learn about how treefam builds families, alignments, and trees and how families defined in treefam. link to treefam data treefam families there are many ways you can link to treefam data. learn how you can link to e.g. our gene families . gene tree widget you can add our gene tree widget to your website: e.g. simply point an iframe to our trees using a treefam family id or a sequence identifier . xfam databases protein domains: rna families: repetitive dna: peptidases: spurious orfs: using treefam data download download all our data: e.g. alignments, hmms, trees, pairwise orthologs, external references and more. api programmatically fetch data through our api and see a list of example scripts in our github repository . use treefamscan to score your sequences against treefam hmms. citing if you find treefam useful, please consider citing the references that describe this work: treefam: 2008 update jue ruan, heng li, et al. nucleic acids research (2008) doi: 10.1093/nar/gkm1005 -- -- embl-ebi services research training industry about us embl-ebi, wellcome trust genome campus, hinxton, cambridgeshire, cb10 1sd, uk +44 (0)1223 49 44 44 copyright © embl-ebi 2013 | ebi is an outstation of the european molecular biology laboratory | privacy | cookies | terms of use --

URL analysis for treefam.org

http://www.treefam.org/help#tabview=tab4
http://www.treefam.org/about/privacy
http://www.treefam.org/help#tabview=tab1
http://www.treefam.org/viewtree/brca2
http://www.treefam.org/search#tabview=tab2
http://www.treefam.org/www.ebi.ac.uk/services
http://www.treefam.org/viewtree/ensg00000139618
http://www.treefam.org/www.ebi.ac.uk/training
http://www.treefam.org/ftp://ftp.sanger.ac.uk/pub/databases/pfam/antifam/
http://www.treefam.org/family/tf105041
http://www.treefam.org/www.treefam.org/viewtree/tf101001
http://www.treefam.org/www.ebi.ac.uk/industry
http://www.treefam.org/about/terms-of-use
http://www.treefam.org/about/cookies
http://www.treefam.org/www.ebi.ac.uk/about
merops.sanger.ac.uk

Whois Information

Whois is a protocol that is access to registering information. You can reach when the website was registered, when it will be expire, what is contact details of the site with the following informations. In a nutshell, it includes these informations;

Domain Name: TREEFAM.ORG
Registry Domain ID: D104926840-LROR
Registrar WHOIS Server:
Registrar URL: http://www.godaddy.com
Updated Date: 2015-07-15T14:05:07Z
Creation Date: 2004-09-24T16:01:12Z
Registry Expiry Date: 2020-09-24T16:01:12Z
Registrar Registration Expiration Date:
Registrar: GoDaddy.com, LLC
Registrar IANA ID: 146
Registrar Abuse Contact Email:
Registrar Abuse Contact Phone:
Reseller:
Domain Status: clientDeleteProhibited https://icann.org/epp#clientDeleteProhibited
Domain Status: clientRenewProhibited https://icann.org/epp#clientRenewProhibited
Domain Status: clientTransferProhibited https://icann.org/epp#clientTransferProhibited
Domain Status: clientUpdateProhibited https://icann.org/epp#clientUpdateProhibited
Registry Registrant ID: C138112125-LROR
Registrant Name: Kelly Bennett
Registrant Organization: EMBL-EBI
Registrant Street: Wellcome Genome Campus
Registrant Street: Hinxton
Registrant City: Cambridge
Registrant State/Province: Cambridgeshire
Registrant Postal Code: CB10 1SD
Registrant Country: GB
Registrant Phone: +44.1223494668
Registrant Phone Ext:
Registrant Fax:
Registrant Fax Ext:
Registrant Email: [email protected]
Registry Admin ID: C138112127-LROR
Admin Name: Julie Mace
Admin Organization: European Bioinfomatics Institute
Admin Street: Wellcome Trust Genome Campus
Admin Street: Hinxton
Admin City: Cambridge
Admin State/Province: Cambridgeshire
Admin Postal Code: CB101SD
Admin Country: GB
Admin Phone: +44.1223494668
Admin Phone Ext:
Admin Fax:
Admin Fax Ext:
Admin Email: [email protected]
Registry Tech ID: C138112131-LROR
Tech Name: Julie Mace
Tech Organization: European Bioinfomatics Institute
Tech Street: Wellcome Trust Genome Campus
Tech Street: Hinxton
Tech City: Cambridge
Tech State/Province: Cambridgeshire
Tech Postal Code: CB101SD
Tech Country: GB
Tech Phone: +44.1223494668
Tech Phone Ext:
Tech Fax:
Tech Fax Ext:
Tech Email: [email protected]
Name Server: NS71.DOMAINCONTROL.COM
Name Server: NS72.DOMAINCONTROL.COM
DNSSEC: unsigned
URL of the ICANN Whois Inaccuracy Complaint Form: https://www.icann.org/wicf/
>>> Last update of WHOIS database: 2017-08-31T17:17:40Z <<<

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  REFERRER http://www.pir.org/

  REGISTRAR Public Interest Registry

SERVERS

  SERVER org.whois-servers.net

  ARGS treefam.org

  PORT 43

  TYPE domain

DOMAIN

  NAME treefam.org

  HANDLE D104926840-LROR

  CREATED 2004-09-24

STATUS
clientDeleteProhibited https://icann.org/epp#clientDeleteProhibited
clientRenewProhibited https://icann.org/epp#clientRenewProhibited
clientTransferProhibited https://icann.org/epp#clientTransferProhibited
clientUpdateProhibited https://icann.org/epp#clientUpdateProhibited

NSERVER

  NS71.DOMAINCONTROL.COM 216.69.185.46

  NS72.DOMAINCONTROL.COM 208.109.255.46

OWNER

  HANDLE C138112125-LROR

  NAME Kelly Bennett

  ORGANIZATION EMBL-EBI

ADDRESS

STREET
Wellcome Genome Campus
Hinxton

  CITY Cambridge

  STATE Cambridgeshire

  PCODE CB10 1SD

  COUNTRY GB

  PHONE +44.1223494668

  EMAIL [email protected]

ADMIN

  HANDLE C138112127-LROR

  NAME Julie Mace

  ORGANIZATION European Bioinfomatics Institute

ADDRESS

STREET
Wellcome Trust Genome Campus
Hinxton

  CITY Cambridge

  STATE Cambridgeshire

  PCODE CB101SD

  COUNTRY GB

  PHONE +44.1223494668

  EMAIL [email protected]

TECH

  HANDLE C138112131-LROR

  NAME Julie Mace

  ORGANIZATION European Bioinfomatics Institute

ADDRESS

STREET
Wellcome Trust Genome Campus
Hinxton

  CITY Cambridge

  STATE Cambridgeshire

  PCODE CB101SD

  COUNTRY GB

  PHONE +44.1223494668

  EMAIL [email protected]

  REGISTERED yes

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